FoodpathGenome: an automated analysis pipeline for foodborne pathogens in silico characterization from whole-genome sequencing

FoodpathGenome: fast genome characterization of foodborne pathogens


FoodPathGenome offers customized analyses for a range of viruses, fungi, and bacteria, with ongoing development of new analyses. If you don't find the specific analysis you need, feel free to reach out to us at [email protected], and we'll be happy to assist

• Clostridium botulinum • Campylobacter spp. • Cronobacter sakazakii • E. coli O157:H7 • Pathogenic STEC (EHEC) • Enteroaggregative E. coli • Enteroinvasive E. coli • Enteropathogenic E. coli • Listeria monocytogenes • Salmonella spp. • Shigella spp. • Yersinia paratuberculosis • Yersinia enterocolitica • Vibrio spp. • Brucella spp. • Legionella spp. • Mycobacterium spp. • Mycoplasma spp. • Bacillus cereus • Clostridium perfringens • Staphylococcus aureus Viruses: • Norovirus • Hepatitis A • Hepatitis E • Little Cherry Virus Parasites? • Cyclospora cayetanensis • Cryptosporidium spp. • Giardia • Trichinella spiralis